Laboratory Notes for BIO 1003

© 30 August 1999, Mary Jean Holland

revised 16 September 2005 (ET, JJ, JW, VS, JHW)

ORGANIC MOLECULES—LABORATORY TESTS

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Organic compounds contain carbon atoms linked together to form chains or rings. Four classes of organic compounds—carbohydrates, lipids, proteins and nucleic acids—are found in large amounts in living organisms. The chemical properties of the different classes depend on the presence of specific functional groups. Today we will carry out tests for carbohydrates, lipids, and proteins.

General Instructions to Students

  1. Supply solutions and dry chemicals must be kept pure. Never pour extra fluid back into a stock bottle. This direction applies to all labs with chemical experiments.
  2. In this laboratory period you will learn about different classes of organic compounds by doing chemical tests for lipids, carbohydrates, and proteins. You will be learning about organic molecules in lecture and will also have the opportunity to discuss the results of today's tests in the lecture/recitation section.
  3. For this laboratory period, work in groups of three to four students. Each group will do all the tests and record results in the following tables:
    Table I. Results of Solubility Test and the Sudan Red Test for Lipids
    Table II. Results of Grease Spot Test for Lipids in Foods
    Table III. Results of Benedict's Test for Reducing Sugars
    Table IV. Results of Lugol's Test for Starch
    Table V. Results of the Biuret Test for Protein
  4. Because it takes time for water to boil on the hotplates, turn on your hotplates as soon as your instructor tells you to begin. By the time you finish testing for lipids, the water should be ready for Benedict's test for reducing sugars. REMEMBER: Bring goggles to your seat before you start heating the water. Once water is boiling, everyone in its vicinity must wear goggles.

I. Lipids

Lipids are organic molecules that are insoluble in water and other polar solvents. Lipids are readily soluble in nonpolar solvents, such as chloroform, benzene, and ether.

Note: Because it takes time for the spots in the Grease Spot Test to dry, a pair of students in each group should set this test up while the other pair of students sets up the solubility test. Everyone should observe the results and record them.

Tests for Lipids

Solubility in Polar and Nonpolar Solvents: Lipids are insoluble in polar solvents and soluble in nonpolar solvents. For this test, the polar solvent is water; the nonpolar solvent is corn oil:

  1. Set up three tubes.
  2. Add 1 mL (20 drops) each of the pair of liquids indicated below.
  3. Mix the contents of each tube using the vortex genie.
  4. Wait 2 minutes.
  5. Examine each tube carefully. Has the sample dissolved in the solvent or do you see two separate layers in the tube?
  6. Record your observations in Table I below.
  7. Save your tubes for the Sudan red test described below.

Sudan Red Test: Sudan red, dissolved in alcohol, is a lipid soluble dye. When Sudan red is added to a mixture of lipids and water, the dye will move into the lipid layer coloring it red:

  1. Add 5 drops of Sudan red dye to each tube from the solubility exercise described above, and
  2. Mix the contents of each tube using the vortex genie.
  3. Wait 2 minutes.
  4. Examine each tube carefully. Where is the red color found?
  5. Record your observations in Table I below.

Table I. Results of Solubility Test and the Sudan Red Test for Lipids

Tube number Tube
contents
How many layers do you see? (One or two?) Is the second substance soluble in water, a polar solvent? Is the second substance soluble in oil, a non-polar solvent ? Which layer does Sudan Red dissolve in and color red? (Water or oil?)
1 Water mixed with water        
2 Water mixed with corn oil        
3 Corn oil mixed with olive oil        

"Grease Spot" Test: You perform this test every time you buy muffins or doughnuts in a paper bag. Lipids make unglazed paper (brown paper, writing paper) translucent:

  1. Put a drop of each sample on a piece of unglazed paper.
  2. Draw a circle around the spot with a soft pencil.
  3. Write the name of the sample in pencil next to the spot.
  4. Allow all spots to dry thoroughly.
  5. Hold the paper in front of a light source and observe the spots.
  6. Record your observations in Table II below.

Table II. Results of Grease Spot Test for Lipids in Foods

Spot number Samples Is the spot translucent? (Yes or no?)
  Standards:  
1 Water  
2 Corn Oil  
3 Olive oil  
     
  Do these foods contain lipids?  
4 Whole milk  
5 Skim milk  
6 Regular Soda  
7 Beer  


II. Carbohydrates

Carbohydrates are the main energy-storage molecules in most organisms. Polysaccharides are formed by linking many monosaccharides together by a series of dehydration synthesis reactions.

Tests for Carbohydrates

Benedict’s Test for reducing sugars: Benedict’s reagent (a blue colored solution containing copper ions) is used to test for the presence of reducing sugars. When a solution containing Benedict’s reagent and a reducing sugar is heated, the copper (II) ions in the Benedict’s reagent are reduced to copper (I) ions and the solution changes from blue to green to orange to red-orange to brick-red. A brick-red precipitate (solid), copper (I) oxide (Cu2O), may appear in the bottom of the tube. The more reducing sugar present in the mixture, the more precipitate will form.

The half-reaction for Benedict’s Test for Reducing Sugars can be shown as:

2 Cu+2 + 2 e- arrow 2 Cu+1

Each copper (II) ion, Cu+2, is reduced to a copper (I) ion, Cu +1, by an electron from the reducing sugar. The reducing sugar is oxidized as a result of giving up its electron.

How to Proceed to Test for Reducing Sugars

Note: All groups will set up tubes 1-6 in Table III below. Groups 1,3, and 5 should also set up tubes 7-10, for a total of ten tubes. Groups 2, 4, and 6 should also set up tubes 11-13 for a total of nine tubes. Everyone is responsible for recording and knowing all results, so you should share information.

  1. Set up tubes 1-6 and either 7-10 or 11-13, depending on group number. Label each tube with a wax pencil.
  2. Add 2 mL (40 drops or one full dropper) of the sample to be tested.
  3. Add 2 mL of Benedict’s reagent. What color is the reagent?
  4. Mix the contents of each tube using the vortex genie.
  5. Record the color of the contents of each tube in the table as soon as you mix them.
  6. Place all the tubes in a beaker of boiling water for 1 or 2 minutes.
  7. Remove the tubes and allow to cool for 1 or 2 minutes.
  8. Observe each tube carefully. Record in Table III the color of any precipitate formed (it may take a few minutes for the precipitate to be visible at the bottom of the tube). Place a star next to the tube with the most precipitate.

Table III. Results of Benedict's Test for Reducing Sugars

Tube Number The color of Benedict's Reagent is: __________ Initial color at mixing Final color after heating Is this a positive result? Is a reducing sugar present?
1 Negative control: Water      
2 Positive control: Glucose      
  Mono- or disaccharides:      
3 fructose      
4 lactose      
5 sucrose      
  Polysaccharides:      
6 starch      
  Do these foods contain a reducing sugar?      
7 whole milk      
8 skim milk      
9 regular soda      
10 diet soda      
11 beer      
12 mashed up potato      
13 mashed up beans      

 

Lugol’s Test (Iodine solution) for Starch: Lugol’s reagent contains iodine and potassium iodide (I2KI). It changes from a yellowish-brown to blue-black in the presence of starch.

How to Proceed to Test for Starch

  1. Set up a porcelain spot plate; number each depression in the plate with a wax pencil.
  2. Add 3 drops of each sample to be tested to a different well in the spot plate, and make a list of what sample corresponds to what number.
  3. Stir with a toothpick.
  4. Add 1 drop of Lugol’s reagent to each sample.
  5. Record the final color of the contents of each well in Table IV.

Table IV. Results of Lugol's Iodine Test for Starch

Tube Number The color of Lugol's Reagent is: __________ Final color after mixing Is this a positive result? Is starch present?
1 Negative control: water    
2 Positive control: starch (a polysaccharide)    
  Mono- or disaccharides:    
3 fructose    
4 lactose    
5 sucrose    
  Do these foods contain starch?    
6 whole milk    
7 skim milk    
8 regular soda    
9 diet soda    
10 beer    
11 mashed up potato*    
12 mashed up beans    
*Make a wet mount. Put some of the potato mash on a slide, add a drop of Lugol's reagent, and cover with a coverslip. Observe under medium power. Is the starch dispersed everywhere in the cells?

III. Proteins

Proteins are complex, specialized molecules composed of carbon, hydrogen, oxygen, and nitrogen. Many proteins also contain sulfur. The building blocks of proteins are the amino acids.

Biuret Test for Proteins: Biuret reagent is a light blue solution which turns purple when mixed with a solution containing protein. When the copper ions of the Biuret Reagent react with peptide bonds in the polypeptide chains, a purple color complex is formed.

Note: All groups will set up tubes 1-4 in Table V below. Groups 1, 3, and 5 should also set up tubes 5-8 for a total of eight tubes. Groups 2, 4, and 6 should also set up tubes 9-13 for a total of 9 tubes. Everyone is responsible for recording and knowing all results, so you should share information.

  1. Label a set of tubes (see note above) with a wax pencil.
  2. Add 2 mL (40 drops) of sample to each tube.
  3. Add 2 mL of biuret reagent to each tube. What color is the biuret reagent?
  4. Mix the contents of each tube using the vortex genie.
  5. Wait 2 minutes.
  6. Examine each tube carefully. Note the color.
  7. Record your observations in the Table V.

Table V. Results of the Biuret Test for Proteins

Tube
number
The color of Biuret Reagent is:
_______________
Initial color at mixing Final color after 2 minutes at room temperature Is this a positive test? Are peptide bonds present (Yes or no?)
1 Negative control: water      
2 Positive control: serum albumin      
  Amino acids:      
3 glycine      
4 lycine      
  Do these foods contain proteins?      
5 whole milk      
6 skim milk      
7 regular soda      
8 diet soda      
9 beer      
10 egg white      
11 egg yolk      
12 mashed up potato      
13 mashed up beans      



[Instructors: please ask technician if resources are available to do this test for amino acids.]

Test for Amino Acids

Ninhydrin Test for Amino Acids: Because amino acids contain a free amino group, they are readily detected with ninhydrin reagent which reacts with free amino groups to form a purple or violet colored substance. If a protein is first heated or digested to hydrolyze the protein into free amino acids, the ninhydrin reagent will detect the amino acids.

  1. Put a drop of each sample—standards and foods—on a piece of filter paper (you may need a second piece of filter paper).
  2. Draw a circle around the spot with a soft pencil.
  3. Write in pencil the name of the sample next to the spot.
  4. Allow all spots to dry thoroughly.
  5. Your instructor will ask the laboratory technician to spray the paper in a fume hood (ninhydrin is toxic).
  6. Wait 20 minutes. The completed ninhydrin test papers will be returned to the lab so that you may record the results of the test.
  7. Observe each spot carefully.
  8. Record your observations in the table.
  9. Look up the molecular structure of the amino acid proline. Do you notice something odd about its amino group?

Results of the Ninhydrin Test for Amino Acids

Tube
number
Standards and foods tested Initial color of sample spot Final color 20 minutes after spraying with Ninhydrin Is this a positive test? Are free amino groups present? (Yes or no?)
1 Negative control: water      
2 Positive control: glycine      
  Amino acids:      
3 alanine      
4 lycine      
5 proline      
  Do these foods contain free amino acids?      
6 whole milk      
7 skim milk      
8 regular soda      
9 diet soda      
10 beer      
11 egg white      
12 egg yolk      
13 mashed up potato      
14 mashed up beans      


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Wahlert & Holland (Revised 7/18/05 jj, vs, & jhw)